IL_7ZUX_088

3D structure

PDB id

7ZUX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Collided ribosome in a disome unit from S. cerevisiae

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

CUCA*UUUG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZUX_088 not in the Motif Atlas

Geometric match to IL_4V88_473

Geometric discrepancy: 0.1405

The information below is about IL_4V88_473

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_36174.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

15

Unit IDs

7ZUX|1|2|C|1675
7ZUX|1|2|U|1676
7ZUX|1|2|C|1677
7ZUX|1|2|A|1678
*
7ZUX|1|2|U|1723
7ZUX|1|2|U|1724
7ZUX|1|2|U|1725
7ZUX|1|2|G|1726

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain DG

40S ribosomal protein S6-A

Chain DI

40S ribosomal protein S8-B

Chain EV

60S ribosomal protein L24-A