IL_7ZUX_089

3D structure

PDB id

7ZUX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Collided ribosome in a disome unit from S. cerevisiae

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

AGGAU*AGAAU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZUX_089 not in the Motif Atlas

Homologous match to IL_4V88_474

Geometric discrepancy: 0.1738

The information below is about IL_4V88_474

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_95716.2

Basepair signature

cWW-cWW-tHS-tHS-tSH-cWW

Number of instances in this motif group

18

Unit IDs

7ZUX|1|2|A|1678
7ZUX|1|2|G|1679
7ZUX|1|2|G|1680
7ZUX|1|2|A|1681
7ZUX|1|2|U|1682
*
7ZUX|1|2|A|1719
7ZUX|1|2|G|1720
7ZUX|1|2|A|1721
7ZUX|1|2|A|1722
7ZUX|1|2|U|1723

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain DG

40S ribosomal protein S6-A

Chain DI

40S ribosomal protein S8-B

Chain EV

60S ribosomal protein L24-A