IL_7ZUX_208

3D structure

PDB id

7ZUX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Collided ribosome in a disome unit from S. cerevisiae

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

GUG*UUUUU

Length

8 nucleotides

Bulged bases

7ZUX|1|5|U|2861

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZUX_208 not in the Motif Atlas

Homologous match to IL_8C3A_113

Geometric discrepancy: 0.1288

The information below is about IL_8C3A_113

Detailed Annotation

Major groove minor groove platform with extra cWW

Broad Annotation

Major groove minor groove platform with extra cWW

Motif group

IL_63959.1

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

18

Unit IDs

7ZUX|1|5|G|2829
7ZUX|1|5|U|2830
7ZUX|1|5|G|2831
*
7ZUX|1|5|U|2859
7ZUX|1|5|U|2860
7ZUX|1|5|U|2861
7ZUX|1|5|U|2862
7ZUX|1|5|U|2863

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain 6

Transfer RNA; tRNA

Chain EB

60S ribosomal protein L3

Chain EI

60S ribosomal protein L10