IL_7ZUX_217

3D structure

PDB id

7ZUX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Collided ribosome in a disome unit from S. cerevisiae

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

CAAU*AGAACG

Length

10 nucleotides

Bulged bases

7ZUX|1|5|A|3143, 7ZUX|1|5|C|3144

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZUX_217 not in the Motif Atlas

Homologous match to IL_5TBW_114

Geometric discrepancy: 0.0664

The information below is about IL_5TBW_114

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.12

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

35

Unit IDs

7ZUX|1|5|C|3005
7ZUX|1|5|A|3006
7ZUX|1|5|A|3007
7ZUX|1|5|U|3008
*
7ZUX|1|5|A|3140
7ZUX|1|5|G|3141
7ZUX|1|5|A|3142
7ZUX|1|5|A|3143
7ZUX|1|5|C|3144
7ZUX|1|5|G|3145

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain EB

60S ribosomal protein L3

Chain EN

60S ribosomal protein L16-A