3D structure

PDB id
7ZUX (explore in PDB, NAKB, or RNA 3D Hub)
Description
Collided ribosome in a disome unit from S. cerevisiae
Experimental method
ELECTRON MICROSCOPY
Resolution
2.5 Å

Loop

Sequence
AUAAGGAUUG*CUUGAUUU
Length
18 nucleotides
Bulged bases
7ZUX|1|2|G|1228
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7ZUX_242 not in the Motif Atlas
Homologous match to IL_8P9A_470
Geometric discrepancy: 0.2954
The information below is about IL_8P9A_470
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_28304.1
Basepair signature
cWW-R-L-R-L-R-L-R-L-L-L-cWW-cWW
Number of instances in this motif group
1

Unit IDs

7ZUX|1|2|A|1224
7ZUX|1|2|U|1225
7ZUX|1|2|A|1226
7ZUX|1|2|A|1227
7ZUX|1|2|G|1228
7ZUX|1|2|G|1229
7ZUX|1|2|A|1230
7ZUX|1|2|U|1231
7ZUX|1|2|U|1232
7ZUX|1|2|G|1233
*
7ZUX|1|2|C|1252
7ZUX|1|2|U|1253
7ZUX|1|2|U|1254
7ZUX|1|2|G|1255
7ZUX|1|2|A|1256
7ZUX|1|2|U|1257
7ZUX|1|2|U|1258
7ZUX|1|2|U|1259

Current chains

Chain 2
18S ribosomal RNA

Nearby chains

Chain DK
40S ribosomal protein S10-A
Chain DM
40S ribosomal protein S12
Chain Dd
40S ribosomal protein S29-A
Chain Df
Ubiquitin

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.2274 s