IL_7ZW0_049

3D structure

PDB id

7ZW0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

FAP-80S Complex - Rotated state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GUCAG*CUUGGAUU

Length

13 nucleotides

Bulged bases

7ZW0|1|2|G|913

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZW0_049 not in the Motif Atlas

Geometric match to IL_4V88_434

Geometric discrepancy: 0.1202

The information below is about IL_4V88_434

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_45067.5

Basepair signature

cWW-tSH-tSS-tHS-R-cWW-cWW-R

Number of instances in this motif group

16

Unit IDs

7ZW0|1|2|G|895
7ZW0|1|2|U|896
7ZW0|1|2|C|897
7ZW0|1|2|A|898
7ZW0|1|2|G|899
*
7ZW0|1|2|C|910
7ZW0|1|2|U|911
7ZW0|1|2|U|912
7ZW0|1|2|G|913
7ZW0|1|2|G|914
7ZW0|1|2|A|915
7ZW0|1|2|U|916
7ZW0|1|2|U|917

Current chains

Chain 2

18S ribosomal RNA (RDN18-1)

Nearby chains

Chain LA

Large subunit ribosomal RNA; LSU rRNA

Chain sQ

40S ribosomal protein S1-A

Chain sZ

40S ribosomal protein S14-A