IL_7ZW0_055

3D structure

PDB id

7ZW0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

FAP-80S Complex - Rotated state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GGAGUAUG*UGAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZW0_055 not in the Motif Atlas

Geometric match to IL_4V88_440

Geometric discrepancy: 0.0677

The information below is about IL_4V88_440

Detailed Annotation

8x6 Sarcin-Ricin with inserted Y; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_41756.1

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

Number of instances in this motif group

5

Unit IDs

7ZW0|1|2|G|1111
7ZW0|1|2|G|1112
7ZW0|1|2|A|1113
7ZW0|1|2|G|1114
7ZW0|1|2|U|1115
7ZW0|1|2|A|1116
7ZW0|1|2|U|1117
7ZW0|1|2|G|1118
*
7ZW0|1|2|U|1129
7ZW0|1|2|G|1130
7ZW0|1|2|A|1131
7ZW0|1|2|A|1132
7ZW0|1|2|A|1133
7ZW0|1|2|C|1134

Current chains

Chain 2

18S ribosomal RNA (RDN18-1)

Nearby chains

Chain Lq

60S ribosomal protein L41-A

Chain sc

40S ribosomal protein S23-A