IL_7ZW0_072

3D structure

PDB id

7ZW0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

FAP-80S Complex - Rotated state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

AAUA*UUCU

Length

8 nucleotides

Bulged bases

7ZW0|1|2|A|1346, 7ZW0|1|2|U|1347

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZW0_072 not in the Motif Atlas

Geometric match to IL_4V88_456

Geometric discrepancy: 0.091

The information below is about IL_4V88_456

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_76458.1

Basepair signature

cWW-cSH-L-cWW

Number of instances in this motif group

2

Unit IDs

7ZW0|1|2|A|1345
7ZW0|1|2|A|1346
7ZW0|1|2|U|1347
7ZW0|1|2|A|1348
*
7ZW0|1|2|U|1377
7ZW0|1|2|U|1378
7ZW0|1|2|C|1379
7ZW0|1|2|U|1380

Current chains

Chain 2

18S ribosomal RNA (RDN18-1)

Nearby chains

Chain sA

40S ribosomal protein S3

Chain sF

40S ribosomal protein S16-A

Chain sJ

40S ribosomal protein S20