3D structure

PDB id
7ZW0 (explore in PDB, NAKB, or RNA 3D Hub)
Description
FAP-80S Complex - Rotated state
Experimental method
ELECTRON MICROSCOPY
Resolution
2.4 Å

Loop

Sequence
CCAAAUGCCUCG*CGCG
Length
16 nucleotides
Bulged bases
7ZW0|1|LA|A|2281, 7ZW0|1|LA|C|2287, 7ZW0|1|LA|C|2306
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7ZW0_180 not in the Motif Atlas
Homologous match to IL_8C3A_095
Geometric discrepancy: 0.067
The information below is about IL_8C3A_095
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_66080.1
Basepair signature
cWW-cWW-tSH-L-cWW-L
Number of instances in this motif group
5

Unit IDs

7ZW0|1|LA|C|2277
7ZW0|1|LA|C|2278
7ZW0|1|LA|A|2279
7ZW0|1|LA|A|2280
7ZW0|1|LA|A|2281
7ZW0|1|LA|U|2282
7ZW0|1|LA|G|2283
7ZW0|1|LA|C|2284
7ZW0|1|LA|C|2285
7ZW0|1|LA|U|2286
7ZW0|1|LA|C|2287
7ZW0|1|LA|G|2288
*
7ZW0|1|LA|C|2304
7ZW0|1|LA|G|2305
7ZW0|1|LA|C|2306
7ZW0|1|LA|G|2307

Current chains

Chain LA
25S ribosomal RNA (RDN25-1)

Nearby chains

Chain 2
Small subunit ribosomal RNA; SSU rRNA
Chain Lq
60S ribosomal protein L41-A
Chain sl
Transfer RNA; tRNA

Coloring options:


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