IL_7ZW0_197

3D structure

PDB id

7ZW0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

FAP-80S Complex - Rotated state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GUG*UUUUU

Length

8 nucleotides

Bulged bases

7ZW0|1|LA|U|2860

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZW0_197 not in the Motif Atlas

Homologous match to IL_8C3A_113

Geometric discrepancy: 0.1049

The information below is about IL_8C3A_113

Detailed Annotation

Major groove minor groove platform with extra cWW

Broad Annotation

Major groove minor groove platform with extra cWW

Motif group

IL_63959.1

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

18

Unit IDs

7ZW0|1|LA|G|2828
7ZW0|1|LA|U|2829
7ZW0|1|LA|G|2830
*
7ZW0|1|LA|U|2858
7ZW0|1|LA|U|2859
7ZW0|1|LA|U|2860
7ZW0|1|LA|U|2861
7ZW0|1|LA|U|2862

Current chains

Chain LA

25S ribosomal RNA (RDN25-1)

Nearby chains

Chain LF

60S ribosomal protein L3

Chain LM

60S ribosomal protein L10