IL_8A3D_012
3D structure
- PDB id
- 8A3D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human mature large subunit of the ribosome with eIF6 and homoharringtonine bound
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.67 Å
Loop
- Sequence
- CCGG*CG
- Length
- 6 nucleotides
- Bulged bases
- 8A3D|1|A|C|340
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8A3D_012 not in the Motif Atlas
- Geometric match to IL_7RQB_073
- Geometric discrepancy: 0.2696
- The information below is about IL_7RQB_073
- Detailed Annotation
- Minor groove platform
- Broad Annotation
- No text annotation
- Motif group
- IL_88739.3
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 11
Unit IDs
8A3D|1|A|C|339
8A3D|1|A|C|340
8A3D|1|A|G|341
8A3D|1|A|G|342
*
8A3D|1|C|C|32
8A3D|1|C|G|33
Current chains
- Chain A
- 28S ribosomal RNA
- Chain C
- 5.8S ribosomal RNA
Nearby chains
- Chain F
- 60S ribosomal protein L4
- Chain d
- 60S ribosomal protein L37
- Chain l
- 60S ribosomal protein L15
- Chain r
- 60S ribosomal protein L13
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