IL_8A3D_040

3D structure

PDB id

8A3D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human mature large subunit of the ribosome with eIF6 and homoharringtonine bound

Experimental method

ELECTRON MICROSCOPY

Resolution

1.67 Å

Loop

Sequence

GG*CGCC

Length

6 nucleotides

Bulged bases

8A3D|1|A|C|1378

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8A3D_040 not in the Motif Atlas

Geometric match to IL_1NBS_009

Geometric discrepancy: 0.2443

The information below is about IL_1NBS_009

Detailed Annotation

Major groove intercalation

Broad Annotation

Major groove intercalation

Motif group

IL_71421.2

Basepair signature

cWW-cWW

Number of instances in this motif group

35

Unit IDs

8A3D|1|A|G|1360
8A3D|1|A|G|1361
*
8A3D|1|A|C|1376
8A3D|1|A|G|1377
8A3D|1|A|C|1378
8A3D|1|A|C|1379

Current chains

Chain A

28S ribosomal RNA

Nearby chains

Chain F

60S ribosomal protein L4

Chain l

60S ribosomal protein L15

Chain r

60S ribosomal protein L13