IL_8A3D_079
3D structure
- PDB id
- 8A3D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human mature large subunit of the ribosome with eIF6 and homoharringtonine bound
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.67 Å
Loop
- Sequence
- CGAUC*GGGAG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8A3D_079 not in the Motif Atlas
- Geometric match to IL_7RQB_075
- Geometric discrepancy: 0.1867
- The information below is about IL_7RQB_075
- Detailed Annotation
- Triple sheared
- Broad Annotation
- No text annotation
- Motif group
- IL_56467.8
- Basepair signature
- cWW-tSH-tSH-tHS-cWW
- Number of instances in this motif group
- 29
Unit IDs
8A3D|1|A|C|2589
8A3D|1|A|G|2590
8A3D|1|A|A|2591
8A3D|1|A|U|2592
8A3D|1|A|C|2593
*
8A3D|1|A|G|2752
8A3D|1|A|G|2753
8A3D|1|A|G|2754
8A3D|1|A|A|2755
8A3D|1|A|G|2756
Current chains
- Chain A
- 28S ribosomal RNA
Nearby chains
- Chain D
- 60S ribosomal protein L8
- Chain T
- 60S ribosomal protein L27
- Chain a
- 60S ribosomal protein L34
Coloring options: