IL_8A3D_087

3D structure

PDB id

8A3D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human mature large subunit of the ribosome with eIF6 and homoharringtonine bound

Experimental method

ELECTRON MICROSCOPY

Resolution

1.67 Å

Loop

Sequence

G(PSU)A*UAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8A3D_087 not in the Motif Atlas

Geometric match to IL_2ET8_001

Geometric discrepancy: 0.1426

The information below is about IL_2ET8_001

Detailed Annotation

Stack and bulge

Broad Annotation

Stack and bulge

Motif group

IL_53541.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

12

Unit IDs

8A3D|1|A|G|2838
8A3D|1|A|PSU|2839
8A3D|1|A|A|2840
*
8A3D|1|A|U|3848
8A3D|1|A|A|3849
8A3D|1|A|C|3850

Current chains

Chain A

28S ribosomal RNA

Nearby chains

Chain E

60S ribosomal protein L3

Chain X

60S ribosomal protein L31