IL_8A3D_091

3D structure

PDB id

8A3D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human mature large subunit of the ribosome with eIF6 and homoharringtonine bound

Experimental method

ELECTRON MICROSCOPY

Resolution

1.67 Å

Loop

Sequence

CGUAAC*GGAUAAG

Length

13 nucleotides

Bulged bases

8A3D|1|A|U|2880

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8A3D_091 not in the Motif Atlas

Homologous match to IL_8C3A_084

Geometric discrepancy: 0.0847

The information below is about IL_8C3A_084

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65969.4

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

8A3D|1|A|C|2867
8A3D|1|A|G|2868
8A3D|1|A|U|2869
8A3D|1|A|A|2870
8A3D|1|A|A|2871
8A3D|1|A|C|2872
*
8A3D|1|A|G|2877
8A3D|1|A|G|2878
8A3D|1|A|A|2879
8A3D|1|A|U|2880
8A3D|1|A|A|2881
8A3D|1|A|A|2882
8A3D|1|A|G|2883

Current chains

Chain A

28S ribosomal RNA

Nearby chains

Chain j

60S ribosomal protein L37a