IL_8A3D_124
3D structure
- PDB id
- 8A3D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human mature large subunit of the ribosome with eIF6 and homoharringtonine bound
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.67 Å
Loop
- Sequence
- CCAAG*CGACG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8A3D_124 not in the Motif Atlas
- Geometric match to IL_5TBW_106
- Geometric discrepancy: 0.136
- The information below is about IL_5TBW_106
- Detailed Annotation
- Triple sheared
- Broad Annotation
- No text annotation
- Motif group
- IL_65585.1
- Basepair signature
- cWW-L-R-tSH-tHS-cWW
- Number of instances in this motif group
- 13
Unit IDs
8A3D|1|A|C|4412
8A3D|1|A|C|4413
8A3D|1|A|A|4414
8A3D|1|A|A|4415
8A3D|1|A|G|4416
*
8A3D|1|A|C|4426
8A3D|1|A|G|4427
8A3D|1|A|A|4428
8A3D|1|A|C|4429
8A3D|1|A|G|4430
Current chains
- Chain A
- 28S ribosomal RNA
Nearby chains
- Chain g
- Ubiquitin-60S ribosomal protein L40
- Chain p
- 60S ribosomal protein L10
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