IL_8A3D_165
3D structure
- PDB id
- 8A3D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human mature large subunit of the ribosome with eIF6 and homoharringtonine bound
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.67 Å
Loop
- Sequence
- GAUG*CGC
- Length
- 7 nucleotides
- Bulged bases
- 8A3D|1|B|U|84
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8A3D_165 not in the Motif Atlas
- Homologous match to IL_5TBW_378
- Geometric discrepancy: 0.0737
- The information below is about IL_5TBW_378
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_44258.2
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 301
Unit IDs
8A3D|1|B|G|82
8A3D|1|B|A|83
8A3D|1|B|U|84
8A3D|1|B|G|85
*
8A3D|1|B|C|92
8A3D|1|B|G|93
8A3D|1|B|C|94
Current chains
- Chain B
- 5S ribosomal RNA
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain M
- 60S ribosomal protein L18a
- Chain m
- 60S ribosomal protein L7
- Chain p
- 60S ribosomal protein L10
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