IL_8A3D_167

3D structure

PDB id

8A3D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human mature large subunit of the ribosome with eIF6 and homoharringtonine bound

Experimental method

ELECTRON MICROSCOPY

Resolution

1.67 Å

Loop

Sequence

CGAAU*ACAUGUG

Length

12 nucleotides

Bulged bases

8A3D|1|A|G|119, 8A3D|1|A|U|150

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8A3D|1|A|C|118
8A3D|1|A|G|119
8A3D|1|A|A|120
8A3D|1|A|A|121
8A3D|1|A|U|122
*
8A3D|1|A|A|147
8A3D|1|A|C|148
8A3D|1|A|A|149
8A3D|1|A|U|150
8A3D|1|A|G|151
8A3D|1|A|U|152
8A3D|1|A|G|153

Current chains

Chain A

28S ribosomal RNA

Nearby chains

Chain C

5.8S ribosomal RNA; 5.8S rRNA

Chain b

Ribosomal protein uL29

Chain l

60S ribosomal protein L15

Chain n

60S ribosomal protein L7a