IL_8A3D_174
3D structure
- PDB id
- 8A3D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human mature large subunit of the ribosome with eIF6 and homoharringtonine bound
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.67 Å
Loop
- Sequence
- CGGUAA*(PSU)AAAUG
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8A3D_174 not in the Motif Atlas
- Homologous match to IL_8GLP_291
- Geometric discrepancy: 0.0375
- The information below is about IL_8GLP_291
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_46203.1
- Basepair signature
- cWW-L-R-L-R-L-R-L-R-cWW
- Number of instances in this motif group
- 2
Unit IDs
8A3D|1|A|C|1732
8A3D|1|A|G|1733
8A3D|1|A|G|1734
8A3D|1|A|U|1735
8A3D|1|A|A|1736
8A3D|1|A|A|1737
*
8A3D|1|A|PSU|1792
8A3D|1|A|A|1793
8A3D|1|A|A|1794
8A3D|1|A|A|1795
8A3D|1|A|U|1796
8A3D|1|A|G|1797
Current chains
- Chain A
- 28S ribosomal RNA
Nearby chains
- Chain B
- 5S ribosomal RNA; 5S rRNA
- Chain G
- 60S ribosomal protein L5
- Chain M
- 60S ribosomal protein L18a
- Chain N
- 60S ribosomal protein L21
- Chain m
- 60S ribosomal protein L7
- Chain p
- 60S ribosomal protein L10
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