IL_8A3D_192

3D structure

PDB id

8A3D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human mature large subunit of the ribosome with eIF6 and homoharringtonine bound

Experimental method

ELECTRON MICROSCOPY

Resolution

1.67 Å

Loop

Sequence

GC(PSU)*GA(PSU)

Length

6 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8A3D_192 not in the Motif Atlas

Homologous match to IL_8P9A_330

Geometric discrepancy: 0.4843

The information below is about IL_8P9A_330

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

214

Unit IDs

8A3D|1|A|G|4401
8A3D|1|A|C|4402
8A3D|1|A|PSU|4403
*
8A3D|1|A|G|4440
8A3D|1|A|A|4441
8A3D|1|A|PSU|4442

Current chains

Chain A

28S ribosomal RNA

Nearby chains

Chain V

60S ribosomal protein L29

Chain p

60S ribosomal protein L10