IL_8A3D_194
3D structure
- PDB id
- 8A3D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human mature large subunit of the ribosome with eIF6 and homoharringtonine bound
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.67 Å
Loop
- Sequence
- (OMC)(PSU)C*G(PSU)G(A2M)G
- Length
- 8 nucleotides
- Bulged bases
- 8A3D|1|A|G|4522, 8A3D|1|A|A2M|4523
- QA status
- Modified nucleotides: OMC, PSU, A2M
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8A3D_194 not in the Motif Atlas
- Homologous match to IL_8C3A_116
- Geometric discrepancy: 0.3468
- The information below is about IL_8C3A_116
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_54650.3
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 16
Unit IDs
8A3D|1|A|OMC|4456
8A3D|1|A|PSU|4457
8A3D|1|A|C|4458
*
8A3D|1|A|G|4520
8A3D|1|A|PSU|4521
8A3D|1|A|G|4522
8A3D|1|A|A2M|4523
8A3D|1|A|G|4524
Current chains
- Chain A
- 28S ribosomal RNA
Nearby chains
- Chain E
- 60S ribosomal protein L3
- Chain P
- 60S ribosomal protein L23
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