IL_8A3L_065

3D structure

PDB id

8A3L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural insights into the binding of bS1 to the ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.42 Å

Loop

Sequence

G(4OC)CC*G(UR3)AAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: 4OC, UR3

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8A3L_065 not in the Motif Atlas

Homologous match to IL_5J7L_059

Geometric discrepancy: 0.0876

The information below is about IL_5J7L_059

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65718.4

Basepair signature

cWW-cSH-cWS-cWW-cWW

Number of instances in this motif group

4

Unit IDs

8A3L|1|A|G|1401
8A3L|1|A|4OC|1402
8A3L|1|A|C|1403
8A3L|1|A|C|1404
*
8A3L|1|A|G|1497
8A3L|1|A|UR3|1498
8A3L|1|A|A|1499
8A3L|1|A|A|1500
8A3L|1|A|C|1501

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain V

Transfer RNA; tRNA

Chain a

Large subunit ribosomal RNA; LSU rRNA