IL_8A3L_141

3D structure

PDB id

8A3L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural insights into the binding of bS1 to the ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.42 Å

Loop

Sequence

UGCAAAC*GGACGUAUA

Length

16 nucleotides

Bulged bases

8A3L|1|a|A|1801, 8A3L|1|a|C|1816, 8A3L|1|a|U|1820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8A3L_141 not in the Motif Atlas

Homologous match to IL_7A0S_065

Geometric discrepancy: 0.0794

The information below is about IL_7A0S_065

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.6

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

8A3L|1|a|U|1798
8A3L|1|a|G|1799
8A3L|1|a|C|1800
8A3L|1|a|A|1801
8A3L|1|a|A|1802
8A3L|1|a|A|1803
8A3L|1|a|C|1804
*
8A3L|1|a|G|1813
8A3L|1|a|G|1814
8A3L|1|a|A|1815
8A3L|1|a|C|1816
8A3L|1|a|G|1817
8A3L|1|a|U|1818
8A3L|1|a|A|1819
8A3L|1|a|U|1820
8A3L|1|a|A|1821

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain A

Small subunit ribosomal RNA; SSU rRNA

Chain c

50S ribosomal protein L2