3D structure

PDB id
8A3L (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structural insights into the binding of bS1 to the ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
3.42 Å

Loop

Sequence
CUC*GCGAG
Length
8 nucleotides
Bulged bases
8A3L|1|a|G|2576, 8A3L|1|a|A|2577
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8A3L_164 not in the Motif Atlas
Geometric match to IL_5J7L_340
Geometric discrepancy: 0.1316
The information below is about IL_5J7L_340
Detailed Annotation
Isolated non-canonical cWW with bulges
Broad Annotation
Isolated non-canonical cWW with bulges
Motif group
IL_07785.1
Basepair signature
cWW-cWW-cWW
Number of instances in this motif group
33

Unit IDs

8A3L|1|a|C|2510
8A3L|1|a|U|2511
8A3L|1|a|C|2512
*
8A3L|1|a|G|2574
8A3L|1|a|C|2575
8A3L|1|a|G|2576
8A3L|1|a|A|2577
8A3L|1|a|G|2578

Current chains

Chain a
23S ribosomal RNA

Nearby chains

Chain d
50S ribosomal protein L3
Chain z
50S ribosomal protein L32

Coloring options:


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