IL_8A3L_190

3D structure

PDB id

8A3L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural insights into the binding of bS1 to the ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.42 Å

Loop

Sequence

GGAACUAGG*CUGUC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8A3L_190 not in the Motif Atlas

Homologous match to IL_5J7L_386

Geometric discrepancy: 0.0651

The information below is about IL_5J7L_386

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_22854.4

Basepair signature

cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

Number of instances in this motif group

7

Unit IDs

8A3L|1|a|G|1666
8A3L|1|a|G|1667
8A3L|1|a|A|1668
8A3L|1|a|A|1669
8A3L|1|a|C|1670
8A3L|1|a|U|1671
8A3L|1|a|A|1672
8A3L|1|a|G|1673
8A3L|1|a|G|1674
*
8A3L|1|a|C|1990
8A3L|1|a|U|1991
8A3L|1|a|G|1992
8A3L|1|a|U|1993
8A3L|1|a|C|1994

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain d

50S ribosomal protein L3

Chain j

50S ribosomal protein L14