IL_8A3L_191

3D structure

PDB id

8A3L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural insights into the binding of bS1 to the ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.42 Å

Loop

Sequence

UUAAUUGAUG*UUGAUCGAAG

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8A3L_191 not in the Motif Atlas

Homologous match to IL_5J7L_387

Geometric discrepancy: 0.0964

The information below is about IL_5J7L_387

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61249.1

Basepair signature

cWW-L-R-L-R-tHS-cWW-cWW-tSH-tHS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

8A3L|1|a|U|1851
8A3L|1|a|U|1852
8A3L|1|a|A|1853
8A3L|1|a|A|1854
8A3L|1|a|U|1855
8A3L|1|a|U|1856
8A3L|1|a|G|1857
8A3L|1|a|A|1858
8A3L|1|a|U|1859
8A3L|1|a|G|1860
*
8A3L|1|a|U|1882
8A3L|1|a|U|1883
8A3L|1|a|G|1884
8A3L|1|a|A|1885
8A3L|1|a|U|1886
8A3L|1|a|C|1887
8A3L|1|a|G|1888
8A3L|1|a|A|1889
8A3L|1|a|A|1890
8A3L|1|a|G|1891

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain W

Transfer RNA; tRNA