IL_8A57_008

3D structure

PDB id

8A57 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of HflXr bound to the Listeria monocytogenes 50S ribosomal subunit.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

AC*GGAU

Length

6 nucleotides

Bulged bases

8A57|1|A|G|410

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8A57_008 not in the Motif Atlas

Geometric match to IL_3RW6_003

Geometric discrepancy: 0.3932

The information below is about IL_3RW6_003

Detailed Annotation

Minor groove platform

Broad Annotation

Minor groove platform

Motif group

IL_24264.1

Basepair signature

cWW-L-R-L-R-L-R-cWW

Number of instances in this motif group

6

Unit IDs

8A57|1|A|A|304
8A57|1|A|C|305
*
8A57|1|A|G|409
8A57|1|A|G|410
8A57|1|A|A|411
8A57|1|A|U|412

Current chains

Chain A

23S ribosomal RNA

Nearby chains