IL_8A57_016
3D structure
- PDB id
- 8A57 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of HflXr bound to the Listeria monocytogenes 50S ribosomal subunit.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.3 Å
Loop
- Sequence
- UUAAG*CGGAG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8A57_016 not in the Motif Atlas
- Geometric match to IL_5J7L_258
- Geometric discrepancy: 0.1019
- The information below is about IL_5J7L_258
- Detailed Annotation
- AAA cross-strand stack
- Broad Annotation
- AAA cross-strand stack
- Motif group
- IL_66798.2
- Basepair signature
- cWW-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 6
Unit IDs
8A57|1|A|U|649
8A57|1|A|U|650
8A57|1|A|A|651
8A57|1|A|A|652
8A57|1|A|G|653
*
8A57|1|A|C|663
8A57|1|A|G|664
8A57|1|A|G|665
8A57|1|A|A|666
8A57|1|A|G|667
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain I
- 50S ribosomal protein L4
- Chain O
- 50S ribosomal protein L15
Coloring options: