IL_8A57_018

3D structure

PDB id

8A57 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of HflXr bound to the Listeria monocytogenes 50S ribosomal subunit.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

8A57|1|A|G|847, 8A57|1|A|G|851

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8A57_018 not in the Motif Atlas

Geometric match to IL_7RQB_018

Geometric discrepancy: 0.0538

The information below is about IL_7RQB_018

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_17470.6

Basepair signature

cWW-tWW-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

8A57|1|A|G|720
8A57|1|A|A|721
8A57|1|A|A|722
8A57|1|A|A|723
8A57|1|A|C|724
*
8A57|1|A|G|845
8A57|1|A|A|846
8A57|1|A|G|847
8A57|1|A|A|848
8A57|1|A|U|849
8A57|1|A|A|850
8A57|1|A|G|851
8A57|1|A|C|852

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain I

50S ribosomal protein L4

Chain O

50S ribosomal protein L15