IL_8A57_044

3D structure

PDB id

8A57 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of HflXr bound to the Listeria monocytogenes 50S ribosomal subunit.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

GAGUG*CUC

Length

8 nucleotides

Bulged bases

8A57|1|A|A|1134

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8A57_044 not in the Motif Atlas

Geometric match to IL_1MMS_002

Geometric discrepancy: 0.1437

The information below is about IL_1MMS_002

Detailed Annotation

Major groove platform with extra cWW

Broad Annotation

Major groove platform

Motif group

IL_51387.3

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

21

Unit IDs

8A57|1|A|G|1133
8A57|1|A|A|1134
8A57|1|A|G|1135
8A57|1|A|U|1136
8A57|1|A|G|1137
*
8A57|1|A|C|1146
8A57|1|A|U|1147
8A57|1|A|C|1148

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 9

50S ribosomal protein L36

Chain E

50S ribosomal protein L11