IL_8A57_045

3D structure

PDB id

8A57 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of HflXr bound to the Listeria monocytogenes 50S ribosomal subunit.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

CGU*AGUG

Length

7 nucleotides

Bulged bases

8A57|1|A|G|1293

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8A57_045 not in the Motif Atlas

Geometric match to IL_4WF9_044

Geometric discrepancy: 0.0528

The information below is about IL_4WF9_044

Detailed Annotation

Isolated cWS basepair

Broad Annotation

No text annotation

Motif group

IL_42997.5

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

23

Unit IDs

8A57|1|A|C|1242
8A57|1|A|G|1243
8A57|1|A|U|1244
*
8A57|1|A|A|1292
8A57|1|A|G|1293
8A57|1|A|U|1294
8A57|1|A|G|1295

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain I

50S ribosomal protein L4

Chain O

50S ribosomal protein L15

Chain T

50S ribosomal protein L20