IL_8A57_074

3D structure

PDB id

8A57 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of HflXr bound to the Listeria monocytogenes 50S ribosomal subunit.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

UUAAG*UGAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8A57_074 not in the Motif Atlas

Geometric match to IL_7RQB_074

Geometric discrepancy: 0.1832

The information below is about IL_7RQB_074

Detailed Annotation

UAA/GAN with extra stack

Broad Annotation

No text annotation

Motif group

IL_90318.1

Basepair signature

cWW-tSH-L-R-L-R-cWW

Number of instances in this motif group

3

Unit IDs

8A57|1|A|U|1884
8A57|1|A|U|1885
8A57|1|A|A|1886
8A57|1|A|A|1887
8A57|1|A|G|1888
*
8A57|1|A|U|1920
8A57|1|A|G|1921
8A57|1|A|A|1922
8A57|1|A|A|1923
8A57|1|A|G|1924

Current chains

Chain A

23S ribosomal RNA

Nearby chains