IL_8A57_075

3D structure

PDB id

8A57 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of HflXr bound to the Listeria monocytogenes 50S ribosomal subunit.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

AGGAG*CGAAU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8A57_075 not in the Motif Atlas

Geometric match to IL_7RQB_075

Geometric discrepancy: 0.0837

The information below is about IL_7RQB_075

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_56467.8

Basepair signature

cWW-tSH-tSH-tHS-cWW

Number of instances in this motif group

29

Unit IDs

8A57|1|A|A|1889
8A57|1|A|G|1890
8A57|1|A|G|1891
8A57|1|A|A|1892
8A57|1|A|G|1893
*
8A57|1|A|C|1915
8A57|1|A|G|1916
8A57|1|A|A|1917
8A57|1|A|A|1918
8A57|1|A|U|1919

Current chains

Chain A

23S ribosomal RNA

Nearby chains