IL_8A57_101

3D structure

PDB id

8A57 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of HflXr bound to the Listeria monocytogenes 50S ribosomal subunit.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

UUAGUAC*GGACCG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8A57_101 not in the Motif Atlas

Geometric match to IL_7A0S_094

Geometric discrepancy: 0.0775

The information below is about IL_7A0S_094

Detailed Annotation

Sarcin-Ricin target in LSU H95; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_16458.6

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-cWW

Number of instances in this motif group

6

Unit IDs

8A57|1|A|U|2685
8A57|1|A|U|2686
8A57|1|A|A|2687
8A57|1|A|G|2688
8A57|1|A|U|2689
8A57|1|A|A|2690
8A57|1|A|C|2691
*
8A57|1|A|G|2696
8A57|1|A|G|2697
8A57|1|A|A|2698
8A57|1|A|C|2699
8A57|1|A|C|2700
8A57|1|A|G|2701

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain K

50S ribosomal protein L6