IL_8A57_108
3D structure
- PDB id
- 8A57 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of HflXr bound to the Listeria monocytogenes 50S ribosomal subunit.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.3 Å
Loop
- Sequence
- UGGAAG*UGGAG
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8A57_108 not in the Motif Atlas
- Geometric match to IL_4WF9_108
- Geometric discrepancy: 0.0734
- The information below is about IL_4WF9_108
- Detailed Annotation
- tHS double platform
- Broad Annotation
- No text annotation
- Motif group
- IL_48489.1
- Basepair signature
- cWW-tSH-L-tHH-L-cWW
- Number of instances in this motif group
- 8
Unit IDs
8A57|1|A|U|2876
8A57|1|A|G|2877
8A57|1|A|G|2878
8A57|1|A|A|2879
8A57|1|A|A|2880
8A57|1|A|G|2881
*
8A57|1|A|U|2894
8A57|1|A|G|2895
8A57|1|A|G|2896
8A57|1|A|A|2897
8A57|1|A|G|2898
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain Q
- 50S ribosomal protein L17
- Chain S
- 50S ribosomal protein L19
Coloring options: