IL_8A5I_004
3D structure
- PDB id
- 8A5I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of Lincomycin bound to the Listeria monocytogenes 50S ribosomal subunit.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.3 Å
Loop
- Sequence
- GGGAG*CGUUGAUC
- Length
- 13 nucleotides
- Bulged bases
- 8A5I|1|A|U|100
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8A5I_004 not in the Motif Atlas
- Geometric match to IL_7RQB_004
- Geometric discrepancy: 0.0848
- The information below is about IL_7RQB_004
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_45067.2
- Basepair signature
- cWW-tSS-L-tSH-L-R-R-cWW-L
- Number of instances in this motif group
- 18
Unit IDs
8A5I|1|A|G|81
8A5I|1|A|G|82
8A5I|1|A|G|83
8A5I|1|A|A|84
8A5I|1|A|G|85
*
8A5I|1|A|C|97
8A5I|1|A|G|98
8A5I|1|A|U|99
8A5I|1|A|U|100
8A5I|1|A|G|101
8A5I|1|A|A|102
8A5I|1|A|U|103
8A5I|1|A|C|104
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain 2
- 50S ribosomal protein L29
- Chain X
- 50S ribosomal protein L24
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