IL_8A5I_006
3D structure
- PDB id
- 8A5I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of Lincomycin bound to the Listeria monocytogenes 50S ribosomal subunit.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.3 Å
Loop
- Sequence
- GGAACUG*CUAAGUAC
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8A5I_006 not in the Motif Atlas
- Geometric match to IL_5J7L_250
- Geometric discrepancy: 0.0469
- The information below is about IL_5J7L_250
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_04346.10
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 15
Unit IDs
8A5I|1|A|G|190
8A5I|1|A|G|191
8A5I|1|A|A|192
8A5I|1|A|A|193
8A5I|1|A|C|194
8A5I|1|A|U|195
8A5I|1|A|G|196
*
8A5I|1|A|C|203
8A5I|1|A|U|204
8A5I|1|A|A|205
8A5I|1|A|A|206
8A5I|1|A|G|207
8A5I|1|A|U|208
8A5I|1|A|A|209
8A5I|1|A|C|210
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain 1
- 50S ribosomal protein L28
- Chain 7
- 50S ribosomal protein L34
- Chain 8
- 50S ribosomal protein L35
- Chain O
- 50S ribosomal protein L15
Coloring options: