IL_8A5I_007

3D structure

PDB id

8A5I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Lincomycin bound to the Listeria monocytogenes 50S ribosomal subunit.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

CUGAGUAG*CGAAACG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8A5I_007 not in the Motif Atlas

Geometric match to IL_4WF9_009

Geometric discrepancy: 0.0651

The information below is about IL_4WF9_009

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_62167.4

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

16

Unit IDs

8A5I|1|A|C|240
8A5I|1|A|U|241
8A5I|1|A|G|242
8A5I|1|A|A|243
8A5I|1|A|G|244
8A5I|1|A|U|245
8A5I|1|A|A|246
8A5I|1|A|G|247
*
8A5I|1|A|C|255
8A5I|1|A|G|256
8A5I|1|A|A|257
8A5I|1|A|A|258
8A5I|1|A|A|259
8A5I|1|A|C|260
8A5I|1|A|G|261

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 8

50S ribosomal protein L35

Chain O

50S ribosomal protein L15