IL_8A5I_025

3D structure

PDB id

8A5I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Lincomycin bound to the Listeria monocytogenes 50S ribosomal subunit.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

GGUAAA*UAC

Length

9 nucleotides

Bulged bases

8A5I|1|A|A|892

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8A5I_025 not in the Motif Atlas

Geometric match to IL_4AOB_003

Geometric discrepancy: 0.3759

The information below is about IL_4AOB_003

Detailed Annotation

Major groove platform with extra pair

Broad Annotation

Major groove platform

Motif group

IL_15698.6

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

12

Unit IDs

8A5I|1|A|G|889
8A5I|1|A|G|890
8A5I|1|A|U|891
8A5I|1|A|A|892
8A5I|1|A|A|893
8A5I|1|A|A|894
*
8A5I|1|A|U|979
8A5I|1|A|A|980
8A5I|1|A|C|981

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 3

50S ribosomal protein L30