IL_8A5I_040
3D structure
- PDB id
- 8A5I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of Lincomycin bound to the Listeria monocytogenes 50S ribosomal subunit.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.3 Å
Loop
- Sequence
- GGAAAAG*CGAAAAUGUACCGGGGC
- Length
- 24 nucleotides
- Bulged bases
- 8A5I|1|A|A|1173, 8A5I|1|A|U|1176
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8A5I_040 not in the Motif Atlas
- Geometric match to IL_5J7L_281
- Geometric discrepancy: 0.0805
- The information below is about IL_5J7L_281
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_50715.3
- Basepair signature
- cWW-tSH-tHH-L-R-L-R-L-tWW-L-cWW-L-L-L-R-L
- Number of instances in this motif group
- 4
Unit IDs
8A5I|1|A|G|1070
8A5I|1|A|G|1071
8A5I|1|A|A|1072
8A5I|1|A|A|1073
8A5I|1|A|A|1074
8A5I|1|A|A|1075
8A5I|1|A|G|1076
*
8A5I|1|A|C|1170
8A5I|1|A|G|1171
8A5I|1|A|A|1172
8A5I|1|A|A|1173
8A5I|1|A|A|1174
8A5I|1|A|A|1175
8A5I|1|A|U|1176
8A5I|1|A|G|1177
8A5I|1|A|U|1178
8A5I|1|A|A|1179
8A5I|1|A|C|1180
8A5I|1|A|C|1181
8A5I|1|A|G|1182
8A5I|1|A|G|1183
8A5I|1|A|G|1184
8A5I|1|A|G|1185
8A5I|1|A|C|1186
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain 9
- 50S ribosomal protein L36
- Chain B
- 5S ribosomal RNA; 5S rRNA
- Chain H
- 50S ribosomal protein L3
- Chain M
- 50S ribosomal protein L13
- Chain P
- 50S ribosomal protein L16
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