IL_8A5I_049

3D structure

PDB id

8A5I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Lincomycin bound to the Listeria monocytogenes 50S ribosomal subunit.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

GGAAG*CGC

Length

8 nucleotides

Bulged bases

8A5I|1|A|G|1376

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8A5I_049 not in the Motif Atlas

Geometric match to IL_4WF9_050

Geometric discrepancy: 0.1104

The information below is about IL_4WF9_050

Detailed Annotation

Major groove minor groove platform with tHH

Broad Annotation

No text annotation

Motif group

IL_06671.2

Basepair signature

cWW-L-cWW-L-L

Number of instances in this motif group

11

Unit IDs

8A5I|1|A|G|1363
8A5I|1|A|G|1364
8A5I|1|A|A|1365
8A5I|1|A|A|1366
8A5I|1|A|G|1367
*
8A5I|1|A|C|1375
8A5I|1|A|G|1376
8A5I|1|A|C|1377

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain V

50S ribosomal protein L22

Chain W

50S ribosomal protein L23