IL_8A5I_064

3D structure

PDB id

8A5I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Lincomycin bound to the Listeria monocytogenes 50S ribosomal subunit.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

ACUCGG*CUGU

Length

10 nucleotides

Bulged bases

8A5I|1|A|G|2025

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8A5I_064 not in the Motif Atlas

Geometric match to IL_5J7L_307

Geometric discrepancy: 0.0504

The information below is about IL_5J7L_307

Detailed Annotation

Intercalated tWH

Broad Annotation

Intercalated tWH

Motif group

IL_76758.2

Basepair signature

cWW-L-R-L-cWW-L-L

Number of instances in this motif group

7

Unit IDs

8A5I|1|A|A|1718
8A5I|1|A|C|1719
8A5I|1|A|U|1720
8A5I|1|A|C|1721
8A5I|1|A|G|1722
8A5I|1|A|G|1723
*
8A5I|1|A|C|2023
8A5I|1|A|U|2024
8A5I|1|A|G|2025
8A5I|1|A|U|2026

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain H

50S ribosomal protein L3

Chain N

50S ribosomal protein L14