IL_8A5I_068

3D structure

PDB id

8A5I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Lincomycin bound to the Listeria monocytogenes 50S ribosomal subunit.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

UGCAAAA*UGACGUAUA

Length

16 nucleotides

Bulged bases

8A5I|1|A|A|1834, 8A5I|1|A|C|1849, 8A5I|1|A|U|1853

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8A5I_068 not in the Motif Atlas

Geometric match to IL_7RQB_070

Geometric discrepancy: 0.0486

The information below is about IL_7RQB_070

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.3

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

8A5I|1|A|U|1831
8A5I|1|A|G|1832
8A5I|1|A|C|1833
8A5I|1|A|A|1834
8A5I|1|A|A|1835
8A5I|1|A|A|1836
8A5I|1|A|A|1837
*
8A5I|1|A|U|1846
8A5I|1|A|G|1847
8A5I|1|A|A|1848
8A5I|1|A|C|1849
8A5I|1|A|G|1850
8A5I|1|A|U|1851
8A5I|1|A|A|1852
8A5I|1|A|U|1853
8A5I|1|A|A|1854

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain G

50S ribosomal protein L2