IL_8A5I_082

3D structure

PDB id

8A5I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Lincomycin bound to the Listeria monocytogenes 50S ribosomal subunit.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

GUAGGAGCC*GGCAAUGGUGGGAUACUAC

Length

28 nucleotides

Bulged bases

8A5I|1|A|U|2205

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8A5I|1|A|G|2154
8A5I|1|A|U|2155
8A5I|1|A|A|2156
8A5I|1|A|G|2157
8A5I|1|A|G|2158
8A5I|1|A|A|2159
8A5I|1|A|G|2160
8A5I|1|A|C|2161
8A5I|1|A|C|2162
*
8A5I|1|A|G|2192
8A5I|1|A|G|2193
8A5I|1|A|C|2194
8A5I|1|A|A|2195
8A5I|1|A|A|2196
8A5I|1|A|U|2197
8A5I|1|A|G|2198
8A5I|1|A|G|2199
8A5I|1|A|U|2200
8A5I|1|A|G|2201
8A5I|1|A|G|2202
8A5I|1|A|G|2203
8A5I|1|A|A|2204
8A5I|1|A|U|2205
8A5I|1|A|A|2206
8A5I|1|A|C|2207
8A5I|1|A|U|2208
8A5I|1|A|A|2209
8A5I|1|A|C|2210

Current chains

Chain A

23S ribosomal RNA

Nearby chains