Loop IL_8A5I

3D structure

PDB id: 8A5I (explore in PDB, NAKB, or RNA 3D Hub)
Description: Cryo-EM structure of Lincomycin bound to the Listeria monocytogenes 50S ribosomal subunit.
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.3 Å

Loop

Sequence: CUUAGACAACCAGGAU*AUUGAAAGAGUGCGUAAUAGCUCACUGGUCGAG
Length: 49 nucleotides
Bulged bases: 8A5I|1|A|A|1092, 8A5I|1|A|A|1130, 8A5I|1|A|A|1134, 8A5I|1|A|G|1152
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

8A5I|1|A|C|1089
8A5I|1|A|U|1090
8A5I|1|A|U|1091
8A5I|1|A|A|1092
8A5I|1|A|G|1093
8A5I|1|A|A|1094
8A5I|1|A|C|1095
8A5I|1|A|A|1096
8A5I|1|A|A|1097
8A5I|1|A|C|1098
8A5I|1|A|C|1099
8A5I|1|A|A|1100
8A5I|1|A|G|1101
8A5I|1|A|G|1102
8A5I|1|A|A|1103
8A5I|1|A|U|1104
*
8A5I|1|A|A|1126
8A5I|1|A|U|1127
8A5I|1|A|U|1128
8A5I|1|A|G|1129
8A5I|1|A|A|1130
8A5I|1|A|A|1131
8A5I|1|A|A|1132
8A5I|1|A|G|1133
8A5I|1|A|A|1134
8A5I|1|A|G|1135
8A5I|1|A|U|1136
8A5I|1|A|G|1137
8A5I|1|A|C|1138
8A5I|1|A|G|1139
8A5I|1|A|U|1140
8A5I|1|A|A|1141
8A5I|1|A|A|1142
8A5I|1|A|U|1143
8A5I|1|A|A|1144
8A5I|1|A|G|1145
8A5I|1|A|C|1146
8A5I|1|A|U|1147
8A5I|1|A|C|1148
8A5I|1|A|A|1149
8A5I|1|A|C|1150
8A5I|1|A|U|1151
8A5I|1|A|G|1152
8A5I|1|A|G|1153
8A5I|1|A|U|1154
8A5I|1|A|C|1155
8A5I|1|A|G|1156
8A5I|1|A|A|1157
8A5I|1|A|G|1158

Current chains

Chain A: 23S ribosomal RNA

Nearby chains

Chain 9: 50S ribosomal protein L36
Chain K: 50S ribosomal protein L6

IL_8A5I_114