IL_8A5I_117

3D structure

PDB id

8A5I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Lincomycin bound to the Listeria monocytogenes 50S ribosomal subunit.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

CUUAGACAACCAGGA*UUGAAAGAGUGCGUAAUAGCUCACUGGUCGAG

Length

47 nucleotides

Bulged bases

8A5I|1|A|A|1092, 8A5I|1|A|A|1130, 8A5I|1|A|A|1134, 8A5I|1|A|G|1152

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8A5I|1|A|C|1089
8A5I|1|A|U|1090
8A5I|1|A|U|1091
8A5I|1|A|A|1092
8A5I|1|A|G|1093
8A5I|1|A|A|1094
8A5I|1|A|C|1095
8A5I|1|A|A|1096
8A5I|1|A|A|1097
8A5I|1|A|C|1098
8A5I|1|A|C|1099
8A5I|1|A|A|1100
8A5I|1|A|G|1101
8A5I|1|A|G|1102
8A5I|1|A|A|1103
*
8A5I|1|A|U|1127
8A5I|1|A|U|1128
8A5I|1|A|G|1129
8A5I|1|A|A|1130
8A5I|1|A|A|1131
8A5I|1|A|A|1132
8A5I|1|A|G|1133
8A5I|1|A|A|1134
8A5I|1|A|G|1135
8A5I|1|A|U|1136
8A5I|1|A|G|1137
8A5I|1|A|C|1138
8A5I|1|A|G|1139
8A5I|1|A|U|1140
8A5I|1|A|A|1141
8A5I|1|A|A|1142
8A5I|1|A|U|1143
8A5I|1|A|A|1144
8A5I|1|A|G|1145
8A5I|1|A|C|1146
8A5I|1|A|U|1147
8A5I|1|A|C|1148
8A5I|1|A|A|1149
8A5I|1|A|C|1150
8A5I|1|A|U|1151
8A5I|1|A|G|1152
8A5I|1|A|G|1153
8A5I|1|A|U|1154
8A5I|1|A|C|1155
8A5I|1|A|G|1156
8A5I|1|A|A|1157
8A5I|1|A|G|1158

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 9

50S ribosomal protein L36

Chain K

50S ribosomal protein L6