IL_8AGT_043
3D structure
- PDB id
- 8AGT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast RQC complex in state F
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- UUCCG*UGA
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8AGT_043 not in the Motif Atlas
- Geometric match to IL_3TD0_002
- Geometric discrepancy: 0.2054
- The information below is about IL_3TD0_002
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- Isolated non-canonical cWW pair
- Motif group
- IL_57744.1
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 22
Unit IDs
8AGT|1|f|U|1014
8AGT|1|f|U|1015
8AGT|1|f|C|1016
8AGT|1|f|C|1017
8AGT|1|f|G|1018
*
8AGT|1|f|U|1034
8AGT|1|f|G|1035
8AGT|1|f|A|1036
Current chains
- Chain f
- 25S rRNA
Nearby chains
- Chain r
- 60S ribosomal protein L10
- Chain s
- 60S ribosomal protein L11-A
- Chain y
- Transfer RNA; tRNA
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