IL_8AGU_009

3D structure

PDB id

8AGU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast RQC complex in state E

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CAA*UG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8AGU_009 not in the Motif Atlas

Homologous match to IL_5TBW_009

Geometric discrepancy: 0.1259

The information below is about IL_5TBW_009

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_05035.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

38

Unit IDs

8AGU|1|f|C|163
8AGU|1|f|A|164
8AGU|1|f|A|165
*
8AGU|1|f|U|257
8AGU|1|f|G|258

Current chains

Chain f

25S rRNA

Nearby chains

Chain U

60S ribosomal protein L35-A

Chain t

60S ribosomal protein L13-A