IL_8AGU_026

3D structure

PDB id

8AGU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast RQC complex in state E

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CUGAUG*CGGAUG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8AGU_026 not in the Motif Atlas

Homologous match to IL_8C3A_028

Geometric discrepancy: 0.1039

The information below is about IL_8C3A_028

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_82488.1

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

8AGU|1|f|C|758
8AGU|1|f|U|759
8AGU|1|f|G|760
8AGU|1|f|A|761
8AGU|1|f|U|762
8AGU|1|f|G|763
*
8AGU|1|f|C|768
8AGU|1|f|G|769
8AGU|1|f|G|770
8AGU|1|f|A|771
8AGU|1|f|U|772
8AGU|1|f|G|773

Current chains

Chain f

25S rRNA

Nearby chains

Chain N

60S ribosomal protein L28

Chain b

60S ribosomal protein L42-A

Chain t

60S ribosomal protein L13-A