IL_8AGU_042

3D structure

PDB id

8AGU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast RQC complex in state E

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

AGA*UAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8AGU_042 not in the Motif Atlas

Homologous match to IL_8C3A_045

Geometric discrepancy: 0.0948

The information below is about IL_8C3A_045

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

8AGU|1|f|A|1009
8AGU|1|f|G|1010
8AGU|1|f|A|1011
*
8AGU|1|f|U|1039
8AGU|1|f|A|1040
8AGU|1|f|U|1041

Current chains

Chain f

25S rRNA

Nearby chains

Chain m

60S ribosomal protein L5

Chain r

60S ribosomal protein L10